Index

C

cluster() (pathsimanalysis.psa.PSAnalysis method)

D

D (pathsimanalysis.psa.PSAnalysis attribute)

discrete_frechet() (in module pathsimanalysis.psa) dist_mat_to_vec() (in module pathsimanalysis.psa)

F

fit_to_reference() (pathsimanalysis.psa.Path method)

G

generate_paths() (pathsimanalysis.psa.PSAnalysis method) get_coord_axes() (in module pathsimanalysis.psa) get_msd_matrix() (in module pathsimanalysis.psa) get_num_atoms() (pathsimanalysis.psa.Path method) (pathsimanalysis.psa.PSAnalysis method)

get_num_paths() (pathsimanalysis.psa.PSAnalysis method) get_pairwise_distances() (pathsimanalysis.psa.PSAnalysis method) get_path_metric_func() (in module pathsimanalysis.psa) get_paths() (pathsimanalysis.psa.PSAnalysis method)

H

hausdorff() (in module pathsimanalysis.psa) hausdorff_avg() (in module pathsimanalysis.psa) hausdorff_neighbors() (in module pathsimanalysis.psa)

hausdorff_pair (pathsimanalysis.psa.PSAPair attribute) hausdorff_pairs (pathsimanalysis.psa.PSAnalysis property) hausdorff_wavg() (in module pathsimanalysis.psa)

L

load() (pathsimanalysis.psa.PSAnalysis method)

M

matrix_id (pathsimanalysis.psa.PSAPair attribute)

module pathsimanalysis.psa

N

nearest_neighbors (pathsimanalysis.psa.PSAnalysis property) (pathsimanalysis.psa.PSAPair attribute)

npaths (pathsimanalysis.psa.PSAPair attribute)

P

pair_id (pathsimanalysis.psa.PSAPair attribute) Path (class in pathsimanalysis.psa) path (pathsimanalysis.psa.Path attribute) path_select (pathsimanalysis.psa.Path attribute) (pathsimanalysis.psa.PSAnalysis attribute) paths (pathsimanalysis.psa.PSAnalysis attribute) pathsimanalysis.psa module

plot() (pathsimanalysis.psa.PSAnalysis method) plot_annotated_heatmap() (pathsimanalysis.psa.PSAnalysis method) plot_nearest_neighbors() (pathsimanalysis.psa.PSAnalysis method) psa_pairs (pathsimanalysis.psa.PSAnalysis property) PSAnalysis (class in pathsimanalysis.psa) PSAPair (class in pathsimanalysis.psa)

R

ref_frame (pathsimanalysis.psa.Path attribute) (pathsimanalysis.psa.PSAnalysis attribute)

run() (pathsimanalysis.psa.Path method) (pathsimanalysis.psa.PSAnalysis method) run_pairs_analysis() (pathsimanalysis.psa.PSAnalysis method)

S

save_paths() (pathsimanalysis.psa.PSAnalysis method) select (pathsimanalysis.psa.Path attribute) (pathsimanalysis.psa.PSAnalysis attribute)

sqnorm() (in module pathsimanalysis.psa)

T

to_path() (pathsimanalysis.psa.Path method)

U

u_fitted (pathsimanalysis.psa.Path attribute) u_original (pathsimanalysis.psa.Path attribute)

u_reference (pathsimanalysis.psa.Path attribute) (pathsimanalysis.psa.PSAnalysis attribute) universes (pathsimanalysis.psa.PSAnalysis attribute)